Latest publications

GPU-accelerated steady-state computation of large probabilistic Boolean networks.

  • Eco-Immunology and Microbiome
February 01, 2019
2019 Feb. Form Asp Comp.31(1):27-46.
By:
  • Mizera A
  • Pang J
  • Yuan Q.

Taming asynchrony for attractor detection in large boolean networks.

  • Eco-Immunology and Microbiome
January 01, 2019
2019 Jan. IEEE/ACM Trans Comput Biol Bioinform.16(1):31-42. Epub 2018 Jun 27.
By:
  • Mizera A
  • Pang J
  • Qu H
  • Yuan Q.

Structure and applications of novel influenza HA tri-stalk protein for evaluation of HA stem-specific immunity.

  • Clinical and Applied Virology
  • Experimental and¬†Molecular Immunology
  • Eco-Immunology and Microbiome
September 27, 2018
2018 Sep. PLoS One.13(9):e0204776.
By:
  • Lu IN
  • Kirsteina A
  • Farinelle S
  • Willieme S
  • Tars K
  • Muller CP
  • Kazaks A.

ASSA-PBN 3.0: Analysing context-sensitive Probabilistic Boolean Networks. In Computational methods in systems biology. 16th international conference, CMSB 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings. (Book Chapter)

  • Eco-Immunology and Microbiome
August 24, 2018
2018 Aug. Switzerland: Springer, 2018. p.277-284. (Lecture Notes in Computer Science LNCS, vol.11095). ISBN 978-3-319-99428-4; 978-3-319-99429-1.
By:
  • Mizera A
  • Pang J
  • Qu H
  • Yuan Q.

Interactions of commensal and pathogenic microorganisms with the intestinal mucosal barrier.

  • Eco-Immunology and Microbiome
August 01, 2018
2018 Aug. Nat Rev Microbiol.16(8):457-470.
By:
  • Martens EC
  • Neumann M
  • Desai MS.

ASSA-PBN: A Toolbox for Probabilistic Boolean Networks.

  • Eco-Immunology and Microbiome
July 01, 2018
2018 Jul. IEEE/ACM Trans Comput Biol Bioinform.15(4):1203-1216. Epub 2017 Nov 14.
By:
  • Mizera A
  • Pang J
  • Su C
  • Yuan QX.

A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility.

  • Eco-Immunology and Microbiome
  • Platform LUXGEN - Micro-array
November 17, 2016
2016 Nov. Cell.167(5):1339-1353.e21.
By:
  • Desai MS
  • Seekatz AM
  • Koropatkin NM
  • Kamada N
  • Hickey CA
  • Wolter M
  • Pudlo NA
  • Kitamoto S
  • Terrapon N
  • Muller A
  • Young VB
  • Henrissat B
  • Wilmes P
  • Stappenbeck TS
  • Nunez G
  • Martens EC.

A microfluidics-based in vitro model of the gastrointestinal human-microbe interface.

  • Eco-Immunology and Microbiome
  • HIV Clinical and Translational Research
May 11, 2016
2016 May. Nat Commun.7:11535.
By:
  • Shah P
  • Fritz JV
  • Glaab E
  • Desai MS
  • Greenhalgh K
  • Frachet A
  • Niegowska M
  • Estes M
  • Jager C
  • Seguin-Devaux C
  • Zenhausern F
  • Wilmes P.

Nitrogen fixation in distinct microbial niches within a chemoautotrophy-driven cave ecosystem.

  • Eco-Immunology and Microbiome
December 01, 2013
2013 Dec. ISME J.7(12):2411-23. Epub 2013 Aug 8.
By:
  • Desai MS
  • Assig K
  • Dattagupta S.

From meta-omics to causality: experimental models for human microbiome research.

  • Eco-Immunology and Microbiome
May 03, 2013
2013 May. Microbiome.1(1):14.
By:
  • Fritz JV
  • Desai MS
  • Shah P
  • Schneider JG
  • Wilmes P.

Bacteroidales ectosymbionts of gut flagellates shape the nitrogen-fixing community in dry-wood termites.

  • Eco-Immunology and Microbiome
July 01, 2012
2012 Jul. ISME J.6(7):1302-13. Epub 2011 Dec 22.
By:
  • Desai MS
  • Brune A.

Strict cospeciation of devescovinid flagellates and Bacteroidales ectosymbionts in the gut of dry-wood termites (Kalotermitidae).

  • Eco-Immunology and Microbiome
August 01, 2010
2010 Aug. Environ Microbiol.12(8):2120-32. Epub 2009 Oct 23.
By:
  • Desai MS
  • Strassert JF
  • Meuser K
  • Hertel H
  • Ikeda-Ohtsubo W
  • Radek R
  • Brune A.

Identification and localization of the multiple bacterial symbionts of the termite gut flagellate Joenia annectens.

  • Eco-Immunology and Microbiome
July 01, 2010
2010 Jul. Microbiology.156(Pt 7):2068-2079. Epub 2010 Apr 8.
By:
  • Strassert JFH
  • Desai MS
  • Radek R
  • Brune A.